IL_9T61_067

3D structure

PDB id

9T61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound C. burnetii 30S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CAGAAG*CCACG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T61_067 not in the Motif Atlas

Geometric match to IL_8B0X_062

Geometric discrepancy: 0.0852

The information below is about IL_8B0X_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.3

Basepair signature

cWW-cWW-tSH-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

9T61|1|A|C|1427
9T61|1|A|A|1428
9T61|1|A|G|1429
9T61|1|A|A|1430
9T61|1|A|A|1431
9T61|1|A|G|1432
*
9T61|1|A|C|1463
9T61|1|A|C|1464
9T61|1|A|A|1465
9T61|1|A|C|1466
9T61|1|A|G|1467

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20