IL_9TI6_056

3D structure

PDB id

9TI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the LSU (postTC-RRF-LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CGAUG*CUAG

Length

9 nucleotides

Bulged bases

9TI6|1|A|U|1464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI6_056 not in the Motif Atlas

Geometric match to IL_8B0X_116

Geometric discrepancy: 0.2073

The information below is about IL_8B0X_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9TI6|1|A|C|1461
9TI6|1|A|G|1462
9TI6|1|A|A|1463
9TI6|1|A|U|1464
9TI6|1|A|G|1465
*
9TI6|1|A|C|1624
9TI6|1|A|U|1625
9TI6|1|A|A|1626
9TI6|1|A|G|1627

Current chains

Chain A

23S rRNA

Nearby chains