IL_9TKR_025

3D structure

PDB id

9TKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S elongation competent complex (70S EC)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TKR_025 not in the Motif Atlas

Homologous match to IL_8B0X_023

Geometric discrepancy: 0.1069

The information below is about IL_8B0X_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11411.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

14

Unit IDs

9TKR|1|D1|C|504
9TKR|1|D1|G|505
9TKR|1|D1|G|506
9TKR|1|D1|C|507
9TKR|1|D1|U|508
9TKR|1|D1|A|509
9TKR|1|D1|A|510
9TKR|1|D1|C|511
*
9TKR|1|D1|G|540
9TKR|1|D1|G|541

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AC

Small ribosomal subunit protein uS4

Chain AK

Small ribosomal subunit protein uS12