IL_9TKR_132

3D structure

PDB id

9TKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S elongation competent complex (70S EC)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

9TKR|1|D2|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TKR_132 not in the Motif Atlas

Homologous match to IL_8B0X_127

Geometric discrepancy: 0.0726

The information below is about IL_8B0X_127

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20700.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

12

Unit IDs

9TKR|1|D2|C|1686
9TKR|1|D2|G|1687
9TKR|1|D2|U|1688
9TKR|1|D2|A|1689
9TKR|1|D2|A|1690
9TKR|1|D2|C|1691
*
9TKR|1|D2|G|1696
9TKR|1|D2|G|1697
9TKR|1|D2|A|1698
9TKR|1|D2|G|1699
9TKR|1|D2|A|1700
9TKR|1|D2|A|1701
9TKR|1|D2|G|1702

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL2

Chain D1

Small subunit ribosomal RNA; SSU rRNA