IL_9TQA_116

3D structure

PDB id

9TQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

9TQA|1|a|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TQA_116 not in the Motif Atlas

Geometric match to IL_8B0X_115

Geometric discrepancy: 0.0329

The information below is about IL_8B0X_115

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60418.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

9TQA|1|a|G|1432
9TQA|1|a|A|1433
9TQA|1|a|A|1434
9TQA|1|a|G|1435
*
9TQA|1|a|C|1557
9TQA|1|a|C|1558
9TQA|1|a|U|1559
9TQA|1|a|G|1560
9TQA|1|a|C|1561

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2