IL_9TT7_163

3D structure

PDB id

9TT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome of WT EBV infected human B-cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TT7_163 not in the Motif Atlas

Geometric match to IL_9PN5_200

Geometric discrepancy: 0.2084

The information below is about IL_9PN5_200

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39691.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

9

Unit IDs

9TT7|1|S2|U|566
9TT7|1|S2|C|567
9TT7|1|S2|C|568
9TT7|1|S2|A|569
*
9TT7|1|S2|U|581
9TT7|1|S2|U|582
9TT7|1|S2|A|583
9TT7|1|S2|A|584

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain SY

40S ribosomal protein S24