IL_9TT7_196
3D structure
- PDB id
- 9TT7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome of WT EBV infected human B-cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UGCAUG*UGAUG
- Length
- 11 nucleotides
- Bulged bases
- 9TT7|1|S2|C|1331, 9TT7|1|S2|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9TT7_196 not in the Motif Atlas
- Geometric match to IL_9PN5_205
- Geometric discrepancy: 0.0543
- The information below is about IL_9PN5_205
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25873.4
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9TT7|1|S2|U|1329
9TT7|1|S2|G|1330
9TT7|1|S2|C|1331
9TT7|1|S2|A|1332
9TT7|1|S2|U|1333
9TT7|1|S2|G|1334
*
9TT7|1|S2|U|1496
9TT7|1|S2|G|1497
9TT7|1|S2|A|1498
9TT7|1|S2|U|1499
9TT7|1|S2|G|1500
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SD
- 40S ribosomal protein S3
- Chain SK
- 40S ribosomal protein S10
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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