IL_9TV2_023

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9TV2|1|L5|G|748, 9TV2|1|L5|C|910

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TV2|1|L5|G|745
9TV2|1|L5|A|746
9TV2|1|L5|A|747
9TV2|1|L5|G|748
9TV2|1|L5|G|749
9TV2|1|L5|U|750
9TV2|1|L5|G|751
9TV2|1|L5|G|752
*
9TV2|1|L5|U|905
9TV2|1|L5|G|906
9TV2|1|L5|U|907
9TV2|1|L5|U|908
9TV2|1|L5|A|909
9TV2|1|L5|C|910
9TV2|1|L5|A|911
9TV2|1|L5|G|912
9TV2|1|L5|C|913

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a