IL_9TV2_029

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TV2_029 not in the Motif Atlas

Homologous match to IL_8GLP_051

Geometric discrepancy: 0.0331

The information below is about IL_8GLP_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.3

Basepair signature

cWW-cWW-tSH-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

9TV2|1|L5|G|1421
9TV2|1|L5|G|1422
9TV2|1|L5|A|1423
9TV2|1|L5|U|1424
9TV2|1|L5|C|1425
*
9TV2|1|L5|G|1451
9TV2|1|L5|C|1452
9TV2|1|L5|G|1453
9TV2|1|L5|C|1454
9TV2|1|L5|A|1455
9TV2|1|L5|C|1456

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain Lb

60S ribosomal protein L29