IL_9TV2_080

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

9TV2|1|L5|U|2870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TV2|1|L5|C|2857
9TV2|1|L5|G|2858
9TV2|1|L5|U|2859
9TV2|1|L5|A|2860
9TV2|1|L5|A|2861
9TV2|1|L5|C|2862
*
9TV2|1|L5|G|2867
9TV2|1|L5|G|2868
9TV2|1|L5|A|2869
9TV2|1|L5|U|2870
9TV2|1|L5|A|2871
9TV2|1|L5|A|2872
9TV2|1|L5|G|2873

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA