IL_9TZ5_001
3D structure
- PDB id
- 9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.22 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9TZ5_001 not in the Motif Atlas
- Homologous match to IL_7A0S_001
- Geometric discrepancy: 0.0875
- The information below is about IL_7A0S_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.2
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
9TZ5|1|a|G|32
9TZ5|1|a|U|33
9TZ5|1|a|G|34
9TZ5|1|a|G|35
9TZ5|1|a|A|36
9TZ5|1|a|U|37
9TZ5|1|a|G|38
*
9TZ5|1|a|C|515
9TZ5|1|a|U|516
9TZ5|1|a|G|517
9TZ5|1|a|A|518
9TZ5|1|a|A|519
9TZ5|1|a|A|520
9TZ5|1|a|C|521
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain e
- Large ribosomal subunit protein bL20
- Chain j
- Large ribosomal subunit protein uL22
- Chain v
- Large ribosomal subunit protein bL32
Coloring options: