IL_9TZ5_004
3D structure
- PDB id
- 9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.22 Å
Loop
- Sequence
- GGGAG*CGAUGAUC
- Length
- 13 nucleotides
- Bulged bases
- 9TZ5|1|a|U|109
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9TZ5_004 not in the Motif Atlas
- Geometric match to IL_9DFE_004
- Geometric discrepancy: 0.12
- The information below is about IL_9DFE_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_71972.2
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
9TZ5|1|a|G|89
9TZ5|1|a|G|90
9TZ5|1|a|G|91
9TZ5|1|a|A|92
9TZ5|1|a|G|93
*
9TZ5|1|a|C|106
9TZ5|1|a|G|107
9TZ5|1|a|A|108
9TZ5|1|a|U|109
9TZ5|1|a|G|110
9TZ5|1|a|A|111
9TZ5|1|a|U|112
9TZ5|1|a|C|113
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein uL24
- Chain r
- Large ribosomal subunit protein uL29
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