IL_9TZ5_006
3D structure
- PDB id
- 9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.22 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9TZ5_006 not in the Motif Atlas
- Homologous match to IL_7A0S_006
- Geometric discrepancy: 0.0886
- The information below is about IL_7A0S_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.4
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9TZ5|1|a|G|192
9TZ5|1|a|G|193
9TZ5|1|a|A|194
9TZ5|1|a|A|195
9TZ5|1|a|C|196
9TZ5|1|a|U|197
9TZ5|1|a|G|198
*
9TZ5|1|a|C|205
9TZ5|1|a|U|206
9TZ5|1|a|A|207
9TZ5|1|a|A|208
9TZ5|1|a|G|209
9TZ5|1|a|U|210
9TZ5|1|a|A|211
9TZ5|1|a|C|212
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 9
- Large ribosomal subunit protein bL28
- Chain k
- Large ribosomal subunit protein uL15
- Chain z
- Large ribosomal subunit protein bL35
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