IL_9TZ5_007

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

UCAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ5_007 not in the Motif Atlas

Geometric match to IL_8B0X_071

Geometric discrepancy: 0.0979

The information below is about IL_8B0X_071

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9TZ5|1|a|U|243
9TZ5|1|a|C|244
9TZ5|1|a|A|245
9TZ5|1|a|G|246
9TZ5|1|a|U|247
9TZ5|1|a|A|248
9TZ5|1|a|G|249
*
9TZ5|1|a|C|257
9TZ5|1|a|G|258
9TZ5|1|a|A|259
9TZ5|1|a|A|260
9TZ5|1|a|A|261
9TZ5|1|a|G|262

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain k

Large ribosomal subunit protein uL15

Chain z

Large ribosomal subunit protein bL35