IL_9TZ5_038

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

9TZ5|1|a|G|1258

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ5_038 not in the Motif Atlas

Homologous match to IL_7A0S_041

Geometric discrepancy: 0.1688

The information below is about IL_7A0S_041

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

9TZ5|1|a|C|1206
9TZ5|1|a|G|1207
9TZ5|1|a|U|1208
*
9TZ5|1|a|A|1257
9TZ5|1|a|G|1258
9TZ5|1|a|U|1259
9TZ5|1|a|G|1260

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

Large ribosomal subunit protein bL20

Chain k

Large ribosomal subunit protein uL15

Chain w

Large ribosomal subunit protein uL4