IL_9TZ5_045

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ5_045 not in the Motif Atlas

Homologous match to IL_7A0S_049

Geometric discrepancy: 0.2396

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.2

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9TZ5|1|a|C|1367
9TZ5|1|a|G|1368
9TZ5|1|a|A|1369
9TZ5|1|a|G|1370
9TZ5|1|a|G|1371
*
9TZ5|1|a|C|1380
9TZ5|1|a|G|1381
9TZ5|1|a|U|1382
9TZ5|1|a|A|1383
9TZ5|1|a|G|1384

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain o

Large ribosomal subunit protein uL2

Chain y

Large ribosomal subunit protein bL34