IL_9TZ5_048

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GAAG*CACGC

Length

9 nucleotides

Bulged bases

9TZ5|1|a|C|1574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ5_048 not in the Motif Atlas

Geometric match to IL_8B0X_115

Geometric discrepancy: 0.1702

The information below is about IL_8B0X_115

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28284.1

Basepair signature

cWW-cWW-tWW-cWW

Number of instances in this motif group

3

Unit IDs

9TZ5|1|a|G|1442
9TZ5|1|a|A|1443
9TZ5|1|a|A|1444
9TZ5|1|a|G|1445
*
9TZ5|1|a|C|1572
9TZ5|1|a|A|1573
9TZ5|1|a|C|1574
9TZ5|1|a|G|1575
9TZ5|1|a|C|1576

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain o

Large ribosomal subunit protein uL2