IL_9TZ5_049

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CUAG*UGAUG

Length

9 nucleotides

Bulged bases

9TZ5|1|a|U|1569

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ5_049 not in the Motif Atlas

Homologous match to IL_7A0S_053

Geometric discrepancy: 0.2092

The information below is about IL_7A0S_053

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9TZ5|1|a|C|1447
9TZ5|1|a|U|1448
9TZ5|1|a|A|1449
9TZ5|1|a|G|1450
*
9TZ5|1|a|U|1566
9TZ5|1|a|G|1567
9TZ5|1|a|A|1568
9TZ5|1|a|U|1569
9TZ5|1|a|G|1570

Current chains

Chain a

23S ribosomal RNA

Nearby chains