IL_9TZ5_056

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CG*UCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ5_056 not in the Motif Atlas

Geometric match to IL_7OAX_001

Geometric discrepancy: 0.2368

The information below is about IL_7OAX_001

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_77710.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

9TZ5|1|a|C|1543
9TZ5|1|a|G|1544
*
9TZ5|1|a|U|1552
9TZ5|1|a|C|1553
9TZ5|1|a|G|1554

Current chains

Chain a

23S ribosomal RNA

Nearby chains