IL_9TZ5_067

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9TZ5|1|a|A|1815, 9TZ5|1|a|C|1830, 9TZ5|1|a|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ5_067 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1066

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9TZ5|1|a|U|1812
9TZ5|1|a|G|1813
9TZ5|1|a|C|1814
9TZ5|1|a|A|1815
9TZ5|1|a|A|1816
9TZ5|1|a|A|1817
9TZ5|1|a|C|1818
*
9TZ5|1|a|G|1827
9TZ5|1|a|G|1828
9TZ5|1|a|A|1829
9TZ5|1|a|C|1830
9TZ5|1|a|G|1831
9TZ5|1|a|U|1832
9TZ5|1|a|A|1833
9TZ5|1|a|U|1834
9TZ5|1|a|A|1835

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain o

Large ribosomal subunit protein uL2