IL_9TZ5_083

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ5_083 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.4121

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

9TZ5|1|a|G|2126
9TZ5|1|a|U|2127
9TZ5|1|a|G|2128
9TZ5|1|a|U|2129
9TZ5|1|a|A|2130
9TZ5|1|a|G|2131
9TZ5|1|a|G|2132
9TZ5|1|a|A|2133
9TZ5|1|a|U|2134
9TZ5|1|a|A|2135
9TZ5|1|a|G|2136
*
9TZ5|1|a|C|2194
9TZ5|1|a|C|2195

Current chains

Chain a

23S ribosomal RNA

Nearby chains