IL_9TZ5_084

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GGAG*CAACCUUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ5_084 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3193

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

9TZ5|1|a|G|2140
9TZ5|1|a|G|2141
9TZ5|1|a|A|2142
9TZ5|1|a|G|2143
*
9TZ5|1|a|C|2177
9TZ5|1|a|A|2178
9TZ5|1|a|A|2179
9TZ5|1|a|C|2180
9TZ5|1|a|C|2181
9TZ5|1|a|U|2182
9TZ5|1|a|U|2183
9TZ5|1|a|G|2184
9TZ5|1|a|A|2185
9TZ5|1|a|A|2186
9TZ5|1|a|A|2187
9TZ5|1|a|U|2188
9TZ5|1|a|A|2189
9TZ5|1|a|C|2190

Current chains

Chain a

23S ribosomal RNA

Nearby chains