IL_9TZ5_096

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ5_096 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.127

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9TZ5|1|a|C|2482
9TZ5|1|a|C|2483
9TZ5|1|a|A|2484
9TZ5|1|a|A|2485
9TZ5|1|a|G|2486
*
9TZ5|1|a|C|2496
9TZ5|1|a|G|2497
9TZ5|1|a|A|2498
9TZ5|1|a|C|2499
9TZ5|1|a|G|2500

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36

Chain s

Large ribosomal subunit protein uL16