IL_9TZ5_100

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CUG*CAAGG

Length

8 nucleotides

Bulged bases

9TZ5|1|a|A|2558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ5_100 not in the Motif Atlas

Geometric match to IL_7EL1_001

Geometric discrepancy: 0.3993

The information below is about IL_7EL1_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70784.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

7

Unit IDs

9TZ5|1|a|C|2537
9TZ5|1|a|U|2538
9TZ5|1|a|G|2539
*
9TZ5|1|a|C|2556
9TZ5|1|a|A|2557
9TZ5|1|a|A|2558
9TZ5|1|a|G|2559
9TZ5|1|a|G|2560

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36

Chain i

Large ribosomal subunit protein uL13