IL_9TZ5_108

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

9TZ5|1|a|A|2781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ5_108 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.0728

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9TZ5|1|a|G|2753
9TZ5|1|a|A|2754
9TZ5|1|a|U|2755
9TZ5|1|a|A|2756
9TZ5|1|a|A|2757
9TZ5|1|a|C|2758
*
9TZ5|1|a|G|2778
9TZ5|1|a|G|2779
9TZ5|1|a|A|2780
9TZ5|1|a|A|2781
9TZ5|1|a|G|2782
9TZ5|1|a|C|2783

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36

Chain g

Large ribosomal subunit protein uL6

Chain i

Large ribosomal subunit protein uL13