IL_9TZ9_085

3D structure

PDB id

9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Empty 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9TZ9|1|a|U|2148

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ9_085 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.2748

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9TZ9|1|a|C|2145
9TZ9|1|a|U|2146
9TZ9|1|a|U|2147
9TZ9|1|a|U|2148
9TZ9|1|a|G|2149
9TZ9|1|a|A|2150
9TZ9|1|a|A|2151
9TZ9|1|a|G|2152
*
9TZ9|1|a|U|2171
9TZ9|1|a|G|2172
9TZ9|1|a|G|2173
9TZ9|1|a|A|2174
9TZ9|1|a|G|2175

Current chains

Chain a

23S ribosomal RNA

Nearby chains