IL_9TZE_110

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9TZE|1|a|U|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZE_110 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1756

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9TZE|1|a|C|1218
9TZE|1|a|U|1219
9TZE|1|a|G|1220
9TZE|1|a|U|1221
9TZE|1|a|G|1222
9TZE|1|a|A|1223
9TZE|1|a|A|1224
9TZE|1|a|G|1225
*
9TZE|1|a|U|1244
9TZE|1|a|G|1245
9TZE|1|a|G|1246
9TZE|1|a|A|1247
9TZE|1|a|G|1248

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

Large ribosomal subunit protein bL20