IL_9TZE_155

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9TZE|1|a|U|2148

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZE_155 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.2749

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9TZE|1|a|C|2145
9TZE|1|a|U|2146
9TZE|1|a|U|2147
9TZE|1|a|U|2148
9TZE|1|a|G|2149
9TZE|1|a|A|2150
9TZE|1|a|A|2151
9TZE|1|a|G|2152
*
9TZE|1|a|U|2171
9TZE|1|a|G|2172
9TZE|1|a|G|2173
9TZE|1|a|A|2174
9TZE|1|a|G|2175

Current chains

Chain a

23S ribosomal RNA

Nearby chains