IL_9UZK_011
3D structure
- PDB id
- 9UZK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EMCV IRES captured on mammalian 40S with initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 9UZK|1|2|U|172
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9UZK_011 not in the Motif Atlas
- Homologous match to IL_9H3G_165
- Geometric discrepancy: 0.1961
- The information below is about IL_9H3G_165
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_24485.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9UZK|1|2|G|145
9UZK|1|2|G|146
9UZK|1|2|A|147
9UZK|1|2|U|148
9UZK|1|2|A|149
9UZK|1|2|A|150
9UZK|1|2|C|151
*
9UZK|1|2|G|167
9UZK|1|2|C|168
9UZK|1|2|U|169
9UZK|1|2|A|170
9UZK|1|2|A|171
9UZK|1|2|U|172
9UZK|1|2|A|173
9UZK|1|2|C|174
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain I
- Small ribosomal subunit protein eS6
- Chain a
- 40S ribosomal protein S24
Coloring options: