IL_9UZK_017

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CAG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UZK_017 not in the Motif Atlas

Geometric match to IL_9H3G_177

Geometric discrepancy: 0.2963

The information below is about IL_9H3G_177

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_19025.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

9UZK|1|2|C|308
9UZK|1|2|A|309
9UZK|1|2|G|310
*
9UZK|1|2|C|321
9UZK|1|2|G|322
9UZK|1|2|G|323

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

Small ribosomal subunit protein eS6