IL_9UZK_018

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

9UZK|1|2|U|351, 9UZK|1|2|C|389, 9UZK|1|2|C|390

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZK|1|2|U|349
9UZK|1|2|A|350
9UZK|1|2|U|351
9UZK|1|2|C|352
9UZK|1|2|A|353
9UZK|1|2|A|354
*
9UZK|1|2|U|386
9UZK|1|2|G|387
9UZK|1|2|A|388
9UZK|1|2|C|389
9UZK|1|2|C|390
9UZK|1|2|A|391
9UZK|1|2|C|392
9UZK|1|2|G|393

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

Small ribosomal subunit protein eS8

Chain N

Small ribosomal subunit protein uS17

Chain Z

Small ribosomal subunit protein uS12