IL_9UZK_030
3D structure
- PDB id
- 9UZK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EMCV IRES captured on mammalian 40S with initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- UCCA*UUAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9UZK_030 not in the Motif Atlas
- Geometric match to IL_6JDV_001
- Geometric discrepancy: 0.2095
- The information below is about IL_6JDV_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.5
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 43
Unit IDs
9UZK|1|2|U|556
9UZK|1|2|C|557
9UZK|1|2|C|558
9UZK|1|2|A|559
*
9UZK|1|2|U|571
9UZK|1|2|U|572
9UZK|1|2|A|573
9UZK|1|2|A|574
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain L
- Small ribosomal subunit protein uS4
- Chain a
- 40S ribosomal protein S24
Coloring options: