IL_9UZK_031

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UZK_031 not in the Motif Atlas

Homologous match to IL_9H3G_185

Geometric discrepancy: 0.1317

The information below is about IL_9H3G_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11411.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

14

Unit IDs

9UZK|1|2|A|589
9UZK|1|2|G|590
9UZK|1|2|G|591
9UZK|1|2|G|592
9UZK|1|2|C|593
9UZK|1|2|A|594
9UZK|1|2|A|595
9UZK|1|2|G|596
*
9UZK|1|2|C|626
9UZK|1|2|U|627

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein uS5

Chain L

Small ribosomal subunit protein uS4

Chain i

Small ribosomal subunit protein eS30