IL_9UZK_033
3D structure
- PDB id
- 9UZK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EMCV IRES captured on mammalian 40S with initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GUCGCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 9UZK|1|2|A|618, 9UZK|1|2|U|620, 9UZK|1|2|U|621
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9UZK_033 not in the Motif Atlas
- Homologous match to IL_9PN5_173
- Geometric discrepancy: 0.2475
- The information below is about IL_9PN5_173
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
9UZK|1|2|G|601
9UZK|1|2|U|602
9UZK|1|2|C|603
9UZK|1|2|G|604
9UZK|1|2|C|605
9UZK|1|2|A|606
9UZK|1|2|G|607
*
9UZK|1|2|C|614
9UZK|1|2|G|615
9UZK|1|2|G|616
9UZK|1|2|U|617
9UZK|1|2|A|618
9UZK|1|2|A|619
9UZK|1|2|U|620
9UZK|1|2|U|621
9UZK|1|2|C|622
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- Small ribosomal subunit protein uS3
- Chain Z
- Small ribosomal subunit protein uS12
- Chain i
- Small ribosomal subunit protein eS30
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