IL_9UZK_067

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGCAUGG*UCUGUGAUG

Length

16 nucleotides

Bulged bases

9UZK|1|2|C|1327, 9UZK|1|2|U|1490, 9UZK|1|2|G|1493

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZK|1|2|U|1325
9UZK|1|2|G|1326
9UZK|1|2|C|1327
9UZK|1|2|A|1328
9UZK|1|2|U|1329
9UZK|1|2|G|1330
9UZK|1|2|G|1331
*
9UZK|1|2|U|1488
9UZK|1|2|C|1489
9UZK|1|2|U|1490
9UZK|1|2|G|1491
9UZK|1|2|U|1492
9UZK|1|2|G|1493
9UZK|1|2|A|1494
9UZK|1|2|U|1495
9UZK|1|2|G|1496

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Small ribosomal subunit protein uS3

Chain M

Small ribosomal subunit protein eS10

Chain W

Small ribosomal subunit protein uS10

Chain e

Small ribosomal subunit protein uS14

Chain f

Ubiquitin-ribosomal protein eS31 fusion protein