IL_9UZK_075

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CCC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UZK_075 not in the Motif Atlas

Geometric match to IL_1NTA_001

Geometric discrepancy: 0.3016

The information below is about IL_1NTA_001

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_77710.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

9UZK|1|2|C|1413
9UZK|1|2|C|1414
9UZK|1|2|C|1415
*
9UZK|1|2|G|1424
9UZK|1|2|G|1425

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

Small ribosomal subunit protein uS9

Chain V

Small ribosomal subunit protein eS19