IL_9UZL_011

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9UZL|1|2|U|172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UZL_011 not in the Motif Atlas

Homologous match to IL_9H3G_165

Geometric discrepancy: 0.1952

The information below is about IL_9H3G_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24485.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

4

Unit IDs

9UZL|1|2|G|145
9UZL|1|2|G|146
9UZL|1|2|A|147
9UZL|1|2|U|148
9UZL|1|2|A|149
9UZL|1|2|A|150
9UZL|1|2|C|151
*
9UZL|1|2|G|167
9UZL|1|2|C|168
9UZL|1|2|U|169
9UZL|1|2|A|170
9UZL|1|2|A|171
9UZL|1|2|U|172
9UZL|1|2|A|173
9UZL|1|2|C|174

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

Small ribosomal subunit protein eS6

Chain a

40S ribosomal protein S24