IL_9UZL_032

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

9UZL|1|2|U|597

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UZL_032 not in the Motif Atlas

Homologous match to IL_9PN5_172

Geometric discrepancy: 0.1765

The information below is about IL_9PN5_172

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

9UZL|1|2|G|596
9UZL|1|2|U|597
9UZL|1|2|C|598
*
9UZL|1|2|G|625
9UZL|1|2|C|626

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Small ribosomal subunit protein uS3

Chain L

Small ribosomal subunit protein uS4

Chain Z

Small ribosomal subunit protein uS12

Chain i

Small ribosomal subunit protein eS30