IL_9UZL_033

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

GUCGCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

9UZL|1|2|A|618, 9UZL|1|2|U|620, 9UZL|1|2|U|621

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZL|1|2|G|601
9UZL|1|2|U|602
9UZL|1|2|C|603
9UZL|1|2|G|604
9UZL|1|2|C|605
9UZL|1|2|A|606
9UZL|1|2|G|607
*
9UZL|1|2|C|614
9UZL|1|2|G|615
9UZL|1|2|G|616
9UZL|1|2|U|617
9UZL|1|2|A|618
9UZL|1|2|A|619
9UZL|1|2|U|620
9UZL|1|2|U|621
9UZL|1|2|C|622

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Small ribosomal subunit protein uS3

Chain Z

Small ribosomal subunit protein uS12

Chain i

Small ribosomal subunit protein eS30