IL_9UZL_048
3D structure
- PDB id
- 9UZL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.01 Å
Loop
- Sequence
- GCUAG*CUUGGACC
- Length
- 13 nucleotides
- Bulged bases
- 9UZL|1|2|G|966
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9UZL_048 not in the Motif Atlas
- Homologous match to IL_9H3G_202
- Geometric discrepancy: 0.2569
- The information below is about IL_9H3G_202
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_71972.2
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
9UZL|1|2|G|948
9UZL|1|2|C|949
9UZL|1|2|U|950
9UZL|1|2|A|951
9UZL|1|2|G|952
*
9UZL|1|2|C|963
9UZL|1|2|U|964
9UZL|1|2|U|965
9UZL|1|2|G|966
9UZL|1|2|G|967
9UZL|1|2|A|968
9UZL|1|2|C|969
9UZL|1|2|C|970
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D
- Small ribosomal subunit protein eS1
- Chain Q
- Ribosomal protein S14
Coloring options: