IL_9UZL_054
3D structure
- PDB id
- 9UZL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.01 Å
Loop
- Sequence
- GCG*CC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9UZL_054 not in the Motif Atlas
- Geometric match to IL_8GLP_246
- Geometric discrepancy: 0.1892
- The information below is about IL_8GLP_246
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_41261.1
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 44
Unit IDs
9UZL|1|2|G|1104
9UZL|1|2|C|1105
9UZL|1|2|G|1106
*
9UZL|1|2|C|1119
9UZL|1|2|C|1120
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C
- Small ribosomal subunit protein uS2
- Chain D
- Small ribosomal subunit protein eS1
- Chain T
- Small ribosomal subunit protein eS17
- Chain c
- Small ribosomal subunit protein eS27
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