IL_9UZL_060

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UZL_060 not in the Motif Atlas

Homologous match to IL_9PN5_199

Geometric discrepancy: 0.2178

The information below is about IL_9PN5_199

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_98469.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

37

Unit IDs

9UZL|1|2|G|1231
9UZL|1|2|G|1232
*
9UZL|1|2|C|1516
9UZL|1|2|A|1517
9UZL|1|2|C|1518

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

Small ribosomal subunit protein uS19

Chain U

Small ribosomal subunit protein uS13

Chain y

Transfer RNA; tRNA