IL_9UZL_069

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

GG*UCUGU

Length

7 nucleotides

Bulged bases

9UZL|1|2|C|1489, 9UZL|1|2|U|1490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UZL_069 not in the Motif Atlas

Homologous match to IL_9PN5_208

Geometric discrepancy: 0.1626

The information below is about IL_9PN5_208

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_41261.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

44

Unit IDs

9UZL|1|2|G|1330
9UZL|1|2|G|1331
*
9UZL|1|2|U|1488
9UZL|1|2|C|1489
9UZL|1|2|U|1490
9UZL|1|2|G|1491
9UZL|1|2|U|1492

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Small ribosomal subunit protein uS3

Chain M

Small ribosomal subunit protein eS10

Chain W

Small ribosomal subunit protein uS10

Chain e

Small ribosomal subunit protein uS14