IL_9UZL_073

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

CAUGC*GAGG

Length

9 nucleotides

Bulged bases

9UZL|1|2|U|1393

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UZL_073 not in the Motif Atlas

Geometric match to IL_8GLP_337

Geometric discrepancy: 0.3303

The information below is about IL_8GLP_337

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37443.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

11

Unit IDs

9UZL|1|2|C|1391
9UZL|1|2|A|1392
9UZL|1|2|U|1393
9UZL|1|2|G|1394
9UZL|1|2|C|1395
*
9UZL|1|2|G|1443
9UZL|1|2|A|1444
9UZL|1|2|G|1445
9UZL|1|2|G|1446

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

Small ribosomal subunit protein uS9

Chain T

Small ribosomal subunit protein eS17

Chain W

Small ribosomal subunit protein uS10

Chain g

Small ribosomal subunit protein RACK1