IL_9UZL_079

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UZL_079 not in the Motif Atlas

Geometric match to IL_8GLP_231

Geometric discrepancy: 0.1275

The information below is about IL_8GLP_231

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

85

Unit IDs

9UZL|1|2|A|1532
9UZL|1|2|C|1533
9UZL|1|2|U|1534
*
9UZL|1|2|A|1589
9UZL|1|2|U|1590
9UZL|1|2|U|1591

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain H

Small ribosomal subunit protein uS7

Chain S

Small ribosomal subunit protein uS9

Chain U

Small ribosomal subunit protein uS13

Chain V

Small ribosomal subunit protein eS19

Chain h

Small ribosomal subunit protein eS25