IL_9UZM_031

3D structure

PDB id

9UZM (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosome without initiation factors

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UZM_031 not in the Motif Atlas

Geometric match to IL_6JDV_001

Geometric discrepancy: 0.1871

The information below is about IL_6JDV_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

43

Unit IDs

9UZM|1|2|U|556
9UZM|1|2|C|557
9UZM|1|2|C|558
9UZM|1|2|A|559
*
9UZM|1|2|U|571
9UZM|1|2|U|572
9UZM|1|2|A|573
9UZM|1|2|A|574

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

Small ribosomal subunit protein uS4

Chain a

40S ribosomal protein S24