IL_9UZM_057

3D structure

PDB id

9UZM (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosome without initiation factors

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UGA*UACA

Length

7 nucleotides

Bulged bases

9UZM|1|2|A|1690, 9UZM|1|2|C|1691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UZM_057 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.3696

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_81485.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

32

Unit IDs

9UZM|1|2|U|1198
9UZM|1|2|G|1199
9UZM|1|2|A|1200
*
9UZM|1|2|U|1689
9UZM|1|2|A|1690
9UZM|1|2|C|1691
9UZM|1|2|A|1692

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein uS5

Chain b

Small ribosomal subunit protein eS26