IL_9VMA_010

3D structure

PDB id

9VMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

a protein complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

UGU*AAUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VMA_010 not in the Motif Atlas

Geometric match to IL_8CRE_417

Geometric discrepancy: 0.2745

The information below is about IL_8CRE_417

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.1

Basepair signature

cWW-L-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9VMA|1|K|U|37
9VMA|1|K|G|38
9VMA|1|K|U|39
*
9VMA|1|K|A|47
9VMA|1|K|A|48
9VMA|1|K|U|49
9VMA|1|K|G|50

Current chains

Chain K

RNA (188-MER)

Nearby chains

Chain E

RNA-dependent DNA polymerase