IL_9VTH_005
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UCAAA*UGACAA
- Length
- 11 nucleotides
- Bulged bases
- 9VTH|1|11|A|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_005 not in the Motif Atlas
- Homologous match to IL_9H3G_157
- Geometric discrepancy: 0.0935
- The information below is about IL_9H3G_157
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_35092.2
- Basepair signature
- cWW-cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9VTH|1|11|U|37
9VTH|1|11|C|38
9VTH|1|11|A|39
9VTH|1|11|A|40
9VTH|1|11|A|41
*
9VTH|1|11|U|470
9VTH|1|11|G|471
9VTH|1|11|A|472
9VTH|1|11|C|473
9VTH|1|11|A|474
9VTH|1|11|A|475
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain SC
- 40S ribosomal protein S9-2-like
- Chain SQ
- 40S ribosomal protein S4
Coloring options: