IL_9VTH_006

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

9VTH|1|11|U|45, 9VTH|1|11|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_006 not in the Motif Atlas

Homologous match to IL_9PN5_145

Geometric discrepancy: 0.095

The information below is about IL_9PN5_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88082.5

Basepair signature

cWW-L-tSS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

9VTH|1|11|G|42
9VTH|1|11|A|43
9VTH|1|11|U|44
9VTH|1|11|U|45
9VTH|1|11|A|46
9VTH|1|11|A|47
9VTH|1|11|G|48
*
9VTH|1|11|C|435
9VTH|1|11|G|436
9VTH|1|11|C|437

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S23